Abstract: Sequence alignment is a fundamental task in bioinformatics, requiring intensive computational processing that grows quadratically with sequence size. High-Performance Computing (HPC) offers ...
Abstract: DNA sequence alignment and approximate string matching present significant challenges across various domains, including natural language processing, data mining, and bioinformatics. Numerous ...
A high-performance GPU-accelerated framework for Smith-Waterman sequence alignment, featuring optimized Triton kernels and custom compiler extensions for automatic shared memory optimization.
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